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Portail > Offres > Offre UMR7275-PASBAR-009 - Ingénieur bioinformatique H/F analyse séquençage NGS

Computational biology engineer H/F for the management and analysis of NGS data

This offer is available in the following languages:
Français - Anglais

Date Limite Candidature : samedi 20 août 2022

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General information

Reference : UMR7275-PASBAR-009
Workplace : VALBONNE
Date of publication : Saturday, July 30, 2022
Type of Contract : FTC Technical / Administrative
Contract Period : 6 months
Expected date of employment : 12 September 2022
Proportion of work : Full time
Remuneration : between 2205 and 2810 € salary per month depending of the experience
Desired level of education : 5-year university degree
Experience required : Indifferent

Missions

Data management of the bioinformatic data produced by the UCAGenomiX platform in Nice-Sophia-Antipolis, a local node of the "France Génomique" infrastructure (https://www.france-genomique.org/). Analysis of nucleic acid sequencing (DNAseq, bulk RNAseq, single-cell RNA-seq, spatial transcriptomics) in the framework of the platform's projects. Implementation and improvement of existing analysis pipelines. Technology watch to develop the offers of UCA GenomiX.

Activities

Under the supervision of the platform's bioinformatics manager, choose and adapt the platform's nucleic acid analysis pipelines (synthetic DNA sequencing for information storage, single-cell transcriptomics, bulk RNA-seq) according to the scientific questions asked by the collaborating teams Demultiplexing of NGS runs made by the platform's sequencers (NextSeq2000, Nanopore PromethION). Set up new primary analyses for the quantification of nucleic acids. Manage the saving of information in Mediante, the information system of the platform (https://www.genomique.info:8443/merge/index). Participate in the exploratory statistical analysis of the results in close collaboration with the collaborators. Write reports on the experiments. Participate in the animation of bioinformatics and scientific and technological watch within the research unit.

Skills

Mastery of primary analysis software in DNAseq, bulk and single-cell transcriptomics, spatial transcriptomics
Good knowledge in biology
Fluency in statistical analysis pipelines using the R environment or Python
Oral and written communication skills (French/English)
Ability to work in close collaboration with different collaborators.

Work Context

The position is available at the Institute of Molecular and Cellular Pharmacology in Valbonne - Sophia Antipolis (Alpes Maritimes). The IPMC (220 people) is organised into 20 research teams and 6 technological platforms. The person to be recruited will work in the UCA GenomiX platform, under the hierarchical responsibility of Dr. Pascal Barbry.

Constraints and risks

Not applicable

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