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Portail > Offres > Offre UMR6004-SAMCHA-005 - Postdoctorat en modélisation du microbiome marin (H/F)

Postdoctoral fellow in marine microbiome modelling (M/F)

This offer is available in the following languages:
Français - Anglais

Date Limite Candidature : jeudi 15 décembre 2022

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General information

Reference : UMR6004-SAMCHA-005
Workplace : NANTES
Date of publication : Thursday, November 24, 2022
Type of Contract : FTC Scientist
Contract Period : 12 months
Expected date of employment : 2 January 2023
Proportion of work : Full time
Remuneration : Between 3000 and 4000 EUR gross salary per month depending on experience.
Desired level of education : PhD
Experience required : Indifferent


Marine plankton form complex communities of interacting organisms at the base of the food chain, supporting biogeochemical cycles in the ocean and participating in climate regulation. Planktonic organisms are adapted to specific environmental conditions that limit their biogeography and ecology. However, we know little about how planktonic organisms interact to maintain perennial communities in the continuously homogenising oceans. Furthermore, the role of planktonic interactions in the realization of major biogeochemical cycles remains to be modelled for full integration of the biological component in ocean models such as PISCES. To address these challenges, we aim to develop computational tools to simulate the exchange of metabolites between marine microorganisms.


The main tasks of the project will be to:
- Model metabolic networks of organisms at the genome-scale using constraint or multi-objective programming approaches (main task).
- Integrate these models into co-occurrence graphs reconstructed via metagenomic data from recent oceanographic campaigns (Tara and Atlanteco) (main task).
- Numerically assess and predict the effects of multiple climate stressors on the state of ecosystems by identifying sentinel species sensitive to nutrient variations and having an impact on other organisms in the community (secondary task).


The candidate should have a PhD in (bio)informatics with skills in modelling of living systems. He or she should have skills in constraint modelling and an interest in issues related to microbial ecology. Experience in metagenomic data analysis is recommended but not required. Good writing and communication skills in English are expected, as well as the ability to work in a team.

Work Context

The candidate will work at LS2N in Nantes on the site of the UFR Sciences et Techniques, within the ComBi team.

Additional Information

Recruitment in the frame of the AtlantECO project (https://www.atlanteco.eu/)

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